Basic Information
Locus ID:
GOSA_00000446
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig47 | 3654140 | 3665551 | + | GOSA_00000446 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 180,816.48 Da | 44.29 | 90.06 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 20 | 174 | 1.35013E-43 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 782 | 823 | 1.5637E-23 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1273 | 1408 | 6.2E-19 | IPR001245 |
| Pfam | PF00069 | Protein kinase domain | 477 | 749 | 1.9E-35 | IPR000719 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1040 | 1175 | 5.7E-19 | IPR001245 |
| Pfam | PF04564 | U-box domain | 779 | 849 | 6.0E-18 | IPR003613 |
| Pfam | PF04564 | U-box domain | 1522 | 1591 | 2.8E-14 | IPR003613 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1018 | 1253 | 3.37E-45 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 446 | 750 | 3.24E-66 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 776 | 848 | 6.18E-24 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1255 | 1507 | 9.17E-49 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 30 | 152 | 4.6E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 1518 | 1592 | 1.77E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 776 | 852 | 4.4E-28 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1415 | 1508 | 4.0E-11 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1341 | 1414 | 1.3E-15 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1013 | 1106 | 2.3E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1107 | 1180 | 1.3E-15 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 457 | 568 | 1.6E-23 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1266 | 1340 | 2.5E-15 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 569 | 774 | 1.5E-49 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1520 | 1594 | 3.7E-22 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1181 | 1265 | 2.0E-7 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 8 | 164 | 3.8E-8 | IPR014729 |
| SMART | SM00220 | serkin_6 | 472 | 758 | 1.8E-30 | IPR000719 |
| SMART | SM00220 | serkin_6 | 1034 | 1271 | 2.6E-10 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 781 | 844 | 1.8E-29 | IPR003613 |
| SMART | SM00504 | Ubox_2 | 1525 | 1589 | 3.9E-21 | IPR003613 |
| SMART | SM00220 | serkin_6 | 1272 | 1501 | 2.4E-10 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 777 | 851 | 38.285957 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1034 | 1271 | 21.078753 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 472 | 783 | 33.106789 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1521 | 1596 | 28.449537 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1267 | 1509 | 21.926794 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 614 | 626 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 478 | 499 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 225 | - | - |
| Coils | Coil | Coil | 416 | 443 | - | - |
| Coils | Coil | Coil | 924 | 958 | - | - |
| Coils | Coil | Coil | 325 | 345 | - | - |
| Coils | Coil | Coil | 355 | 394 | - | - |
| Coils | Coil | Coil | 861 | 900 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_048504102.1 | uncharacterized protein LOC104887375 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9RIX1 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_061300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology