Basic Information
Locus ID:
GOSA_00000329
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Short Name:
NTMC2T4.1
Description:
ntmc2t4,ntmc2type4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig47 | 2693401 | 2704312 | + | GOSA_00000329 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 71,606.07 Da | 60.78 | 87.69 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 265 | 361 | 2.47767E-28 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 68 | 247 | 1.8E-19 | IPR039010 |
| Pfam | PF00168 | C2 domain | 263 | 357 | 3.2E-22 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 263 | 387 | 1.12E-28 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 255 | 389 | 7.1E-30 | IPR035892 |
| SMART | SM00239 | C2_3c | 264 | 361 | 1.1E-20 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 246 | 364 | 20.868294 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 66 | 248 | 23.556025 | IPR031468 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 552 | 603 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 649 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 524 | 538 | - | - |
| Coils | Coil | Coil | 439 | 466 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_021748091.1 | synaptotagmin-4-like [Chenopodium quinoa] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RHY5 | Synaptotagmin-5 OS=Spinacia oleracea OX=3562 GN=SOVF_070370 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology