Basic Information
Locus ID:
GOSA_00000314
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig47 | 2536593 | 2537840 | + | GOSA_00000314 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 42,971.08 Da | 54.39 | 98.72 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 36 | 111 | 4.9E-6 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 195 | 324 | 3.4E-18 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 183 | 325 | 1.07E-22 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 31 | 173 | 4.84E-17 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 25 | 165 | 3.8E-12 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 169 | 324 | 9.2E-16 | IPR036378 |
| SMART | SM00554 | fasc_3 | 221 | 325 | 5.2E-15 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 25 | 167 | 11.529951 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 183 | 322 | 18.071699 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 395 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 376 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60900.1 | FASCICLIN-like arabinogalactan-protein 10. | 0 |
| RefSeq | XP_010692313.3 | fasciclin-like arabinogalactan protein 8, partial [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LZX4 | Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana OX=3702 GN=FLA10 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9S236 | Fasciclin-like arabinogalactan protein 8 OS=Spinacia oleracea OX=3562 GN=SOVF_003130 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology