Basic Information
Locus ID:
GOSA_00000159
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig47 | 1289112 | 1294051 | - | GOSA_00000159 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 36,265.25 Da | 68.86 | 70.77 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF54495 | UBC-like | 4 | 99 | 3.3E-12 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 109 | 2.0E-13 | IPR016135 |
| SMART | SM00591 | RWD2001b | 9 | 102 | 6.9E-5 | IPR006575 |
| ProSiteProfiles | PS50908 | RWD domain profile. | 9 | 102 | 10.294838 | IPR006575 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 325 | - | - |
| Coils | Coil | Coil | 323 | 325 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60300.1 | RWD domain-containing protein. | 0 |
| RefSeq | XP_021865178.1 | E3 ubiquitin-protein ligase RNF25 isoform X2 [Spinacia oleracea] | 0 |
| TrEMBL | A0A0K9QYG7 | E3 ubiquitin-protein ligase RNF25 OS=Spinacia oleracea OX=3562 GN=SOVF_132340 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1754 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1293 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023318 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29156, Sbi_jg3376 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6568 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000159 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11419, Sgl16799 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015657, gene:ENSEOMG00000035062 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0007450, CQ.Regalona.r1.2BG0022080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30001710 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G004970, COCNU_07G004980 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713599 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.776.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G02137 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G60300.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006060m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g02920.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g062650.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1054 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1058 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g04830 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0625s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g03110 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-4489, nbisL1-mrna-6078 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.61 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032394 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.15, AH04.1666, BH04.1661, CH04.1896 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0685250, gene-QOZ80_9BG0711360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0367140.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_066528 |
| Poaceae | Oryza coarctata | 1 | Oco22G008480 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g35870.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G181100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103133 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G005740, Chr17G005150 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G304000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG022150, gene_TRIDC4BG029670 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G146300.1, TraesCS4B02G156000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb200010_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-45777 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18972 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.1010 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g29120 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.245 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19475 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2606 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7043 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000028l.147 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010379 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8889 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24340 |
| Salicaceae | Populus euphratica | 1 | populus_peu31877 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645799 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002263 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G2447 |
| Zosteraceae | Zostera marina | 1 | Zosma01g07640.v3.1 |