Basic Information
Locus ID:
GOSA_00000104
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Sec12-like protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig47 | 843374 | 847960 | - | GOSA_00000104 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 41,861.95 Da | 27.27 | 91.83 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 143 | 254 | 6.7E-7 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 72 | 340 | 1.74E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 8 | 346 | 2.0E-66 | IPR015943 |
| SMART | SM00320 | WD40_4 | 300 | 340 | 3.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 71 | 109 | 51.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 258 | 297 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 126 | 164 | 0.036 | IPR001680 |
| SMART | SM00320 | WD40_4 | 171 | 206 | 1.8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 181 | 215 | 9.40565 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021735541.1 | SEC12-like protein 2 [Chenopodium quinoa] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A803M4G0 | ANAPC4_WD40 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology