Basic Information
Locus ID:
GOSA_00000085
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig47 | 718994 | 724901 | + | GOSA_00000085 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 166,392.06 Da | 38.25 | 106.98 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1243 | 1463 | 1.26521E-124 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 305 | 593 | 8.16742E-102 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 619 | 819 | 1.06657E-108 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 926 | 1220 | 5.99354E-88 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 307 | 572 | 8.4E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 637 | 771 | 1.8E-19 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 937 | 1172 | 2.9E-30 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1262 | 1410 | 7.2E-29 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 615 | 835 | 3.22E-55 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 294 | 593 | 2.62E-34 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 928 | 1227 | 1.27E-47 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1237 | 1474 | 2.57E-67 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 890 | 1226 | 1.3E-51 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 277 | 603 | 7.3E-50 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1228 | 1480 | 6.0E-81 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 617 | 848 | 7.3E-69 | IPR027417 |
| SMART | SM00382 | AAA_5 | 646 | 819 | 1.1E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1271 | 1463 | 1.2E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 928 | 1208 | 31.28944 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 309 | 585 | 34.60548 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 619 | 842 | 21.715466 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1245 | 1479 | 16.580103 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 744 | 758 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 877 | 896 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 858 | 896 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 858 | 876 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_010691965.1 | putative ABC transporter C family member 15 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LIL0 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology