Basic Information
Locus ID:
GOSA_00000023
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig47 | 190791 | 193692 | + | GOSA_00000023 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 55,684.24 Da | 29.37 | 73.56 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 21 | 152 | 2.08272E-41 | IPR033734 |
| CDD | cd09612 | Jacalin | 192 | 322 | 2.82807E-33 | IPR033734 |
| CDD | cd09612 | Jacalin | 377 | 508 | 1.5916E-39 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 192 | 322 | 2.4E-26 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 377 | 507 | 4.9E-31 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 23 | 153 | 1.5E-35 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 182 | 322 | 3.27E-36 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 365 | 507 | 2.49E-41 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 11 | 153 | 5.63E-43 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 8 | 155 | 9.6E-51 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 171 | 322 | 5.6E-44 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 360 | 507 | 2.7E-51 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 377 | 508 | 1.2E-36 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 21 | 153 | 9.3E-39 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 192 | 324 | 1.2E-33 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 366 | 508 | 47.297245 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 181 | 324 | 45.224442 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 10 | 153 | 50.364243 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_021758328.1 | jacalin-related lectin 3-like [Chenopodium quinoa] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LKG8 | Jacalin-related lectin 3-like OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology