Basic Information
Locus ID:
GOSA_00000002
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig47 | 24888 | 30566 | + | GOSA_00000002 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 139,391.78 Da | 35.83 | 93.34 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 79 | 384 | 1.99927E-71 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 154 | 191 | 2.4E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 268 | 301 | 4.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 115 | 149 | 4.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 308 | 343 | 1.7E-5 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 407 | 835 | 7.6E-123 | IPR006692 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 977 | 1234 | 7.5E-113 | IPR010714 |
| Pfam | PF00400 | WD domain, G-beta repeat | 196 | 233 | 9.5E-7 | IPR001680 |
| SUPERFAMILY | SSF63829 | Calcium-dependent phosphotriesterase | 289 | 657 | 1.5E-15 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 71 | 1.76E-8 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 74 | 382 | 1.12E-69 | IPR036322 |
| Gene3D | G3DSA:1.25.40.470 | - | 707 | 879 | 1.4E-62 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 71 | 1.6E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 72 | 386 | 3.6E-119 | IPR015943 |
| SMART | SM00320 | WD40_4 | 304 | 343 | 1.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 263 | 302 | 2.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 68 | 107 | 7.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 37 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 152 | 191 | 3.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 194 | 233 | 2.9E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 346 | 384 | 310.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 110 | 149 | 4.6E-7 | IPR001680 |
| PIRSF | PIRSF003354 | Alpha-COP | 960 | 1231 | 5.5E-77 | IPR016391 |
| PIRSF | PIRSF003354 | Alpha-COP | 71 | 967 | 0.0 | IPR016391 |
| PIRSF | PIRSF003354 | Alpha-COP | 1 | 70 | 2.8E-42 | IPR016391 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 159 | 191 | 11.233774 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 159 | 200 | 14.151034 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 117 | 149 | 10.442869 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 117 | 158 | 12.814306 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 311 | 343 | 11.840134 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 201 | 234 | 12.024679 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 270 | 305 | 12.914561 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 201 | 234 | 14.552052 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 311 | 352 | 14.919653 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 270 | 305 | 10.732868 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 220 | 234 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 178 | 192 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 330 | 344 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 220 | 234 | 1.3E-6 | IPR020472 |
| Coils | Coil | Coil | 1142 | 1169 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_010672358.1 | coatomer subunit alpha-2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q94A40 | Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9R9S1 | Coatomer subunit alpha OS=Spinacia oleracea OX=3562 GN=SOVF_090870 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology