Basic Information
Locus ID:
FtriNA30591
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig00781 | 49445 | 51355 | + | FtriNA30591 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 42,635.86 Da | 48.76 | 79.04 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 156 | 198 | 1.92937E-19 | - |
| Pfam | PF13639 | Ring finger domain | 155 | 198 | 1.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 135 | 204 | 8.01E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 203 | 6.4E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 156 | 197 | 1.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 156 | 198 | 12.828597 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 376 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_043634583.1 | RING-H2 finger protein ATL46-like [Erigeron canadensis] | 0 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6Q4W2 | RING-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_02669 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology