Basic Information
Locus ID:
FtriNA28860
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig02638 | 350496 | 351390 | + | FtriNA28860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 19,353.82 Da | 31.36 | 89.65 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 17 | 79 | 5.54742E-14 | IPR002048 |
| CDD | cd00051 | EFh | 99 | 161 | 4.52546E-18 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 99 | 158 | 1.7E-13 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 16 | 77 | 6.6E-10 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 8 | 161 | 1.57E-38 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 167 | 2.2E-41 | - |
| SMART | SM00054 | efh_1 | 99 | 127 | 3.8E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 17 | 45 | 0.29 | IPR002048 |
| SMART | SM00054 | efh_1 | 53 | 81 | 0.07 | IPR002048 |
| SMART | SM00054 | efh_1 | 135 | 163 | 3.8E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 49 | 84 | 10.663839 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 95 | 130 | 13.397589 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 131 | 166 | 13.007053 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 13 | 48 | 12.393354 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 26 | 38 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 144 | 156 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 62 | 74 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 108 | 120 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_022022145.1 | probable calcium-binding protein CML15 [Helianthus annuus] | 0 |
| Q6L5F4 | Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica OX=39947 GN=CML14 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6PFB6 | Calcium-binding protein CML16 OS=Mikania micrantha OX=192012 GN=E3N88_07957 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology