Basic Information
Locus ID:
FtriNA28455
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig00122 | 69132 | 70396 | - | FtriNA28455 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 45,703.08 Da | 52.75 | 109.58 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 14 | 56 | 5.63382E-24 | - |
| Pfam | PF04564 | U-box domain | 10 | 78 | 2.1E-22 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 109 | 376 | 1.33E-14 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 5 | 80 | 3.53E-28 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 97 | 406 | 3.5E-15 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 80 | 3.1E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 13 | 76 | 3.5E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 9 | 83 | 37.861362 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_022023135.1 | E3 ubiquitin-protein ligase PUB23 [Helianthus annuus] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251VIR0 | RING-type E3 ubiquitin transferase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr02g0050161 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology