Basic Information
Locus ID:
FtriNA23874
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
strubbelig-receptor family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig02495 | 94560 | 98207 | + | FtriNA23874 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 75,961.09 Da | 42.87 | 86.23 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12087 | TM_EGFR-like | 279 | 311 | 0.00167173 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 24 | 64 | 4.1E-9 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 137 | 196 | 4.9E-8 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 412 | 673 | 4.6E-33 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 22 | 228 | 1.53E-39 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 391 | 673 | 6.88E-63 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 381 | 479 | 2.5E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 23 | 243 | 4.7E-49 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 480 | 695 | 8.5E-53 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 408 | 676 | 29.983173 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 414 | 441 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 338 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 314 | 338 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 278 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14350.1 | STRUBBELIG-receptor family 7. | 0 |
| RefSeq | XP_022033513.1 | protein STRUBBELIG-RECEPTOR FAMILY 7 [Helianthus annuus] | 0 |
| Q9LUL4 | Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana OX=3702 GN=SRF7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251UV52 | Putative leucine-rich repeat protein, plant-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr04g0094201 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology