Basic Information
Locus ID:
FtriNA23368
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig02222_ERROPOS1545680+ | 25459 | 28563 | + | FtriNA23368 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.07 | 59,683.83 Da | 38.70 | 87.37 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 292 | 390 | 1.69242E-14 | - |
| CDD | cd00030 | C2 | 444 | 509 | 4.42917E-12 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 29 | 275 | 6.3E-39 | IPR001245 |
| Pfam | PF00168 | C2 domain | 290 | 390 | 1.2E-12 | IPR000008 |
| Pfam | PF00168 | C2 domain | 443 | 511 | 2.5E-11 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 442 | 511 | 8.18E-16 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 285 | 401 | 1.64E-16 | IPR035892 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 10 | 276 | 1.35E-66 | IPR011009 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 421 | 514 | 8.3E-15 | IPR035892 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 102 | 1.1E-32 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 104 | 287 | 1.9E-43 | - |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 288 | 417 | 1.2E-17 | IPR035892 |
| SMART | SM00239 | C2_3c | 291 | 392 | 2.7E-12 | IPR000008 |
| SMART | SM00239 | C2_3c | 443 | 521 | 1.6 | IPR000008 |
| SMART | SM00220 | serkin_6 | 24 | 280 | 2.7E-24 | IPR000719 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 421 | 521 | 12.814966 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 272 | 394 | 14.036459 | IPR000008 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 24 | 280 | 31.905397 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 30 | 55 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 146 | 158 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G39000.1 | Malectin/receptor-like protein kinase family protein. | 0 |
| RefSeq | XP_043625101.1 | probable serine/threonine-protein kinase PBL19 isoform X2 [Erigeron canadensis] | 0 |
| Q9FID8 | Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana OX=3702 GN=At5g39000 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2U1PI69 | C2 domain-containing protein OS=Artemisia annua OX=35608 GN=CTI12_AA149580 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 30 | Ftri11G25505, Ftri12G15517, Ftri14G01992, Ftri14G04619 ... |