Basic Information
Locus ID:
FtriNA22484
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig00127 | 98826 | 101797 | - | FtriNA22484 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 54,343.61 Da | 52.45 | 85.47 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 246 | 294 | 2.2093E-15 | - |
| Pfam | PF12906 | RING-variant domain | 246 | 293 | 5.0E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 242 | 297 | 2.52E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 232 | 301 | 2.0E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 245 | 294 | 2.2E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 238 | 300 | 18.880959 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 237 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_022005844.1 | uncharacterized protein LOC110904308 isoform X1 [Helianthus annuus] | 0 |
| TrEMBL | A0A251SKQ9 | Putative zinc finger, RING-CH-type, Zinc finger, RING/FYVE/PHD-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr14g0452901 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology