Basic Information
Locus ID:
FtriNA22463
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig02495 | 110855 | 111730 | + | FtriNA22463 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 24,358.26 Da | 54.75 | 84.04 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 71 | 114 | 1.18657E-19 | - |
| Pfam | PF13639 | Ring finger domain | 71 | 114 | 2.6E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 52 | 120 | 1.08E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 51 | 124 | 2.1E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 72 | 113 | 3.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 72 | 114 | 12.725326 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_023760236.1 | RING-H2 finger protein ATL3-like [Lactuca sativa] | 0 |
| P0C035 | RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6NCA9 | RING-type E3 ubiquitin transferase OS=Mikania micrantha OX=192012 GN=E3N88_22518 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology