Basic Information
Locus ID:
FtriNA19806
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase BAH1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig00055 | 113608 | 117284 | - | FtriNA19806 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.82 | 31,693.63 Da | 47.25 | 99.24 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 188 | 212 | 6.9E-7 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 182 | 241 | 4.04E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 164 | 273 | 6.7E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 188 | 237 | 2.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 188 | 238 | 11.81064 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 203 | 212 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G38920.2 | SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related. | 0 |
| RefSeq | XP_023760937.1 | probable E3 ubiquitin-protein ligase BAH1-like 1 [Lactuca sativa] | 0 |
| Q8GW10 | Probable E3 ubiquitin-protein ligase BAH1-like OS=Arabidopsis thaliana OX=3702 GN=RF178 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6P104 | RING-type E3 ubiquitin transferase OS=Mikania micrantha OX=192012 GN=E3N88_16255 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 6 | FtriNA03106, FtriNA07125, FtriNA10019, FtriNA19806 ... |