Basic Information
Locus ID:
FtriNA19118
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
BAH and coiled-coil domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig03096_ERROPOS172483 | 62172 | 65110 | + | FtriNA19118 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.45 | 24,889.03 Da | 45.75 | 50.46 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04714 | BAH_BAHCC1 | 22 | 156 | 8.90947E-57 | - |
| Pfam | PF01426 | BAH domain | 23 | 135 | 1.3E-23 | IPR001025 |
| Pfam | PF00628 | PHD-finger | 140 | 188 | 2.0E-10 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 130 | 189 | 3.32E-19 | IPR011011 |
| Gene3D | G3DSA:2.30.30.490 | - | 1 | 132 | 2.1E-30 | IPR043151 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 199 | 1.4E-20 | IPR013083 |
| SMART | SM00439 | BAH_4 | 21 | 136 | 3.6E-40 | IPR001025 |
| SMART | SM00249 | PHD_3 | 140 | 187 | 4.5E-10 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 138 | 189 | 9.231899 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 21 | 136 | 22.997816 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 141 | 186 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 216 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_023772475.1 | chromatin remodeling protein EBS [Lactuca sativa] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A251V8F9 | Putative PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein OS=Helianthus annuus OX=4232 GN=EBS PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology