Basic Information
Locus ID:
FtriNA18121
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig03223 | 112682 | 119839 | - | FtriNA18121 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 122,388.62 Da | 37.23 | 81.18 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 446 | 483 | 0.001 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 914 | 947 | 0.0015 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 836 | 1097 | 2.24E-36 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 342 | 657 | 1.02E-40 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 564 | 669 | 1.9E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 746 | 965 | 2.1E-24 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 295 | 537 | 3.3E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 967 | 1105 | 2.5E-5 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1053 | 1095 | 280.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 336 | 375 | 0.0069 | IPR001680 |
| SMART | SM00320 | WD40_4 | 908 | 947 | 5.6E-5 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 4.4E-13 | IPR006595 |
| SMART | SM00667 | Lish | 4 | 36 | 5.7E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 529 | 572 | 290.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 997 | 1039 | 89.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 575 | 615 | 3.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 396 | 436 | 33.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 826 | 862 | 320.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 442 | 483 | 8.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 865 | 905 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 485 | 526 | 0.031 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.130571 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 449 | 492 | 9.305395 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 915 | 950 | 10.126507 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 342 | 384 | 8.603614 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 915 | 956 | 12.379869 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.755314 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 470 | 484 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_021974175.1 | topless-related protein 3 [Helianthus annuus] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251VMN0 | Putative TOPLESS-related 3 OS=Helianthus annuus OX=4232 GN=TPR3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology