Basic Information
Locus ID:
FtriNA16380
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig00255 | 74414 | 75626 | - | FtriNA16380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 29,477.44 Da | 42.52 | 112.13 | 0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48371 | ARM repeat | 53 | 269 | 1.31E-15 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 41 | 277 | 2.7E-27 | IPR011989 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.2 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_030444945.1 | E3 ubiquitin-protein ligase UPL3-like, partial [Syzygium oleosum] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6ZS87 | HECT-type E3 ubiquitin transferase OS=Davidia involucrata OX=16924 GN=Din_016878 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology