Basic Information
Locus ID:
FtriNA14261
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig00594 | 27105 | 28410 | - | FtriNA14261 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.92 | 46,957.00 Da | 40.87 | 100.77 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 34 | 76 | 1.05436E-26 | - |
| Pfam | PF04564 | U-box domain | 30 | 101 | 2.7E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 109 | 376 | 6.58E-13 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 20 | 106 | 1.24E-30 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 11 | 104 | 4.3E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 105 | 401 | 3.8E-8 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 33 | 96 | 2.5E-32 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 29 | 103 | 41.25811 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_021972817.1 | U-box domain-containing protein 21 [Helianthus annuus] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251UAE4 | RING-type E3 ubiquitin transferase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr07g0191711 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology