Basic Information
Locus ID:
FtriNA12935
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
AMSH-like ubiquitin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig00258 | 80245 | 86752 | + | FtriNA12935 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 54,126.46 Da | 53.87 | 82.41 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 298 | 473 | 8.27127E-114 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 295 | 402 | 1.2E-18 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 12 | 104 | 1.9E-11 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 298 | 428 | 3.14E-20 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 283 | 473 | 2.0E-73 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 2 | 127 | 3.5E-31 | - |
| SMART | SM00232 | pad1_6 | 298 | 426 | 1.5E-16 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 299 | 429 | 30.584822 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 291 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_022020889.1 | AMSH-like ubiquitin thioesterase 3 isoform X1 [Helianthus annuus] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6LEF7 | MPN domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_43788 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology