Basic Information
Locus ID:
FtriNA10708
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Blue copper
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig00064 | 56499 | 58865 | - | FtriNA10708 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 30,743.09 Da | 41.13 | 84.78 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04216 | Phytocyanin | 26 | 125 | 1.14083E-39 | - |
| Pfam | PF02298 | Plastocyanin-like domain | 36 | 118 | 3.7E-19 | IPR003245 |
| Pfam | PF02298 | Plastocyanin-like domain | 180 | 235 | 5.6E-10 | IPR003245 |
| SUPERFAMILY | SSF49503 | Cupredoxins | 145 | 243 | 5.85E-17 | IPR008972 |
| SUPERFAMILY | SSF49503 | Cupredoxins | 25 | 126 | 9.21E-29 | IPR008972 |
| Gene3D | G3DSA:2.60.40.420 | - | 145 | 246 | 3.9E-16 | IPR008972 |
| Gene3D | G3DSA:2.60.40.420 | - | 24 | 129 | 1.2E-29 | IPR008972 |
| ProSiteProfiles | PS51485 | Phytocyanin domain profile. | 26 | 127 | 32.256054 | IPR003245 |
| ProSiteProfiles | PS51485 | Phytocyanin domain profile. | 146 | 244 | 21.180799 | IPR003245 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_022024638.1 | blue copper protein 1b [Helianthus annuus] | 0 |
| A0A072U307 | Blue copper protein 1b OS=Medicago truncatula OX=3880 GN=BCP1B PE=2 SV=1 | 0 | |
| TrEMBL | A0A251RU58 | Putative cupredoxin OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr17g0561421 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology