Basic Information
Locus ID:
FtriNA10019
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase BAH1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig03120 | 21652 | 24570 | - | FtriNA10019 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.06 | 38,231.19 Da | 56.81 | 95.94 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 226 | 250 | 1.3E-6 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 220 | 278 | 1.41E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 210 | 329 | 3.9E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 226 | 274 | 3.2E-6 | IPR001841 |
| ProSiteProfiles | PS51382 | SPX domain profile. | 1 | 157 | 9.822668 | IPR004331 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 226 | 275 | 11.781134 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 241 | 250 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G38920.1 | SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related. | 0 |
| RefSeq | XP_023760937.1 | probable E3 ubiquitin-protein ligase BAH1-like 1 [Lactuca sativa] | 0 |
| A2XK56 | Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_12825 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2J6K357 | RING-type E3 ubiquitin transferase OS=Lactuca sativa OX=4236 GN=LSAT_6X31981 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 6 | FtriNA03106, FtriNA07125, FtriNA10019, FtriNA19806 ... |