Basic Information
Locus ID:
FtriNA08785
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Oligouridylate-binding protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig00460 | 41539 | 45786 | + | FtriNA08785 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.18 | 44,312.19 Da | 41.09 | 69.58 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 253 | 327 | 1.07058E-31 | - |
| CDD | cd12619 | RRM2_PUB1 | 134 | 208 | 9.23993E-53 | - |
| CDD | cd12352 | RRM1_TIA1_like | 50 | 120 | 2.2215E-35 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 50 | 116 | 1.7E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 255 | 321 | 3.0E-10 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 135 | 205 | 1.8E-18 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 244 | 332 | 1.36E-21 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 37 | 126 | 1.16E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 126 | 213 | 5.37E-28 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 229 | 332 | 3.7E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 41 | 127 | 1.8E-19 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 128 | 226 | 2.0E-27 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 254 | 323 | 15.0 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 134 | 207 | 0.0084 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 134 | 207 | 1.9E-25 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 254 | 323 | 6.7E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 49 | 118 | 4.3E-15 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 253 | 327 | 14.50465 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 48 | 122 | 14.521706 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 133 | 211 | 17.438179 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 247 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_021969470.1 | oligouridylate-binding protein 1 [Helianthus annuus] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6M3R4 | Oligouridylate-binding protein 1-like OS=Mikania micrantha OX=192012 GN=E3N88_36302 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology