Basic Information
Locus ID:
FtriNA05963
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig02959 | 45912 | 49346 | - | FtriNA05963 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 110,907.90 Da | 41.31 | 110.60 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 262 | 327 | 6.2E-14 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 251 | 329 | 1.24E-18 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 197 | 941 | 7.61E-30 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 621 | 835 | 1.3E-23 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 251 | 329 | 1.3E-18 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 4 | 121 | 8.2E-8 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 845 | 980 | 4.5E-7 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 332 | 605 | 2.3E-14 | IPR011989 |
| SMART | SM00185 | arm_5 | 697 | 739 | 260.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 655 | 695 | 59.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 534 | 574 | 150.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 741 | 781 | 40.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 784 | 824 | 410.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 262 | 325 | 5.6E-18 | IPR003613 |
| SMART | SM00185 | arm_5 | 406 | 445 | 190.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 858 | 898 | 16.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 258 | 332 | 17.790468 | IPR003613 |
| Coils | Coil | Coil | 67 | 87 | - | - |
| Coils | Coil | Coil | 188 | 215 | - | - |
| Coils | Coil | Coil | 125 | 145 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_022002830.1 | U-box domain-containing protein 44 [Helianthus annuus] | 0 |
| TrEMBL | A0A251SYF8 | RING-type E3 ubiquitin transferase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr13g0424651 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5773 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30235850 |
| Apiaceae | Apium graveolens | 1 | Ag5G02549 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G000790 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711617 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA05963 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0368 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0379 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.379 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1544 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2607 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6116 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.999 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012874 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6400 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2184 |
| Salicaceae | Populus euphratica | 1 | populus_peu21467 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609553 |
| Solanaceae | Solanum chilense | 1 | SOLCI003509000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031387 |