Basic Information
Locus ID:
Ftri9G34047
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 87233801 | 87235348 | - | Ftri9G34047 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.95 | 49,254.68 Da | 42.27 | 106.25 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 33 | 75 | 9.7059E-24 | - |
| Pfam | PF04564 | U-box domain | 29 | 101 | 7.7E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 123 | 421 | 1.23E-19 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 26 | 107 | 2.78E-28 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 119 | 434 | 3.5E-20 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 7 | 106 | 1.8E-26 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 32 | 96 | 9.7E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 28 | 103 | 32.898922 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_021977484.1 | U-box domain-containing protein 21 [Helianthus annuus] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6LS72 | RING-type E3 ubiquitin transferase OS=Mikania micrantha OX=192012 GN=E3N88_37801 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology