Basic Information
Locus ID:
Ftri9G34027
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 85161068 | 85175644 | - | Ftri9G34027 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 71,686.25 Da | 36.11 | 80.88 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04468 | S1_eIF5A | 577 | 647 | 2.28293E-31 | - |
| Pfam | PF03776 | Septum formation topological specificity factor MinE | 118 | 171 | 1.3E-10 | IPR005527 |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 576 | 645 | 2.2E-28 | IPR020189 |
| Pfam | PF00400 | WD domain, G-beta repeat | 270 | 302 | 0.068 | IPR001680 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 506 | 584 | 1.05E-24 | IPR008991 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 577 | 647 | 1.09E-24 | IPR012340 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 191 | 464 | 3.66E-30 | IPR036322 |
| Gene3D | G3DSA:3.30.1070.10 | Cell division topological specificity factor MinE | 105 | 179 | 1.8E-5 | IPR036707 |
| Gene3D | G3DSA:2.30.30.30 | - | 493 | 576 | 1.4E-40 | IPR014722 |
| Gene3D | G3DSA:2.130.10.10 | - | 188 | 487 | 1.9E-52 | IPR015943 |
| Gene3D | G3DSA:2.40.50.140 | - | 577 | 649 | 1.8E-33 | - |
| SMART | SM01376 | eIF_5a_2 | 576 | 645 | 4.5E-34 | IPR020189 |
| SMART | SM00320 | WD40_4 | 401 | 437 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 182 | 221 | 0.89 | IPR001680 |
| SMART | SM00320 | WD40_4 | 263 | 302 | 0.054 | IPR001680 |
| SMART | SM00320 | WD40_4 | 224 | 261 | 320.0 | IPR001680 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 510 | 644 | 1.9E-39 | IPR001884 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 404 | 446 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 270 | 311 | 11.377324 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 270 | 305 | 8.913786 | - |
| ProSitePatterns | PS00302 | Eukaryotic initiation factor 5A hypusine signature. | 541 | 548 | - | IPR019769 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13950.1 | eukaryotic elongation factor 5A-1. Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced. | 0 |
| RefSeq | XP_021995436.1 | mitotic checkpoint protein BUB3.3 [Helianthus annuus] | 0 |
| Q9AXJ4 | Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2U1KF04 | Transducin/WD40 repeat-like superfamily protein OS=Artemisia annua OX=35608 GN=CTI12_AA608070 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg28605, jg30205, jg9294 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11170, gene_3829 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah013075, Ah015761 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g153130, BVRB_8g189660 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg25217, Sbi_jg42998, Sbi_jg45606, Sbi_jg9059 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11451, Seu_jg19527 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002080, GOSA_00011285 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl35730, Sgl35749, Sgl41047, Sgl43381, Sgl48184 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000002928, gene:ENSEOMG00000011133 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.6BG0000350, CQ.Regalona.r1.8AG0011850 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30106460, pistato.v30227270 |
| Apiaceae | Apium graveolens | 3 | Ag1G00844, Ag1G01450, Ag7G01300 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G003030 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705293, gene-LOC120107817 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1494.V1.1, AsparagusV1_08.1260.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G11853, Ftri9G34027 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G49910.1, AT1G69400.1, AT3G19590.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10009106m.g.v1.0, Thhalv10011632m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g36790.v2.2, Sp3g17630.v2.2, Sp5g24450.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g030470.2N, BniB05g066350.2N, BniB07g005560.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq07G1200, Ceq09G0277 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G1264, Cgl09G0312 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g19220, gene.Cymno11g04180 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0486s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate09g05260, gene.Thate09g06100, gene.Thate09g06110 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11153 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.323, evm.TU.LG08.597 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002328, Pov_00012168 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30782 |
| Poaceae | Echinochloa crus-galli | 5 | AH01.3205, BH01.3567, BH01.661, CH01.3779, Contig309.24 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0229240, gene-QOZ80_3BG0274340 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0129480.1, HORVU.MOREX.r3.4HG0396550.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_016440, gene-QYE76_040006 |
| Poaceae | Oryza coarctata | 5 | Oco05G016690, Oco05G024110, Oco06G017310, Oco06G025020 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os03g33580.1, LOC_Os03g55140.1, LOC_Os07g39950.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G315500 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0105121, Pt_Chr0107257, Pt_Chr0107284, Pt_Chr0304687 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G004730, Chr04G013860, Chr04G029010, Chr07G013300 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G356600, Tel4E01G420800, Tel5E01G629700 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC2AG024910, gene_TRIDC2AG024920 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS2A02G194000.1, TraesCS2B02G212800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb011600_P001, Zm00001eb057920_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-16224, nbis-gene-43500 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2750, Zma_g3401 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.852, evm.TU.LG01.853, evm.TU.LG04.2596 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g01220, gene.Posoc04g08380 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_15_RagTag.584, evm.TU.Scaffold_2_RagTag.405 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-26752, nbisL1-mrna-4790 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14474, nbisL1-mrna-5813 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15785, nbisL1-mrna-9751 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000001l.294, evm.TU.utg000009l.717 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002538, Maker00005014 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11370, nbisL1-mrna-2548 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16495, nbisL1-mrna-23491 |
| Salicaceae | Populus euphratica | 4 | populus_peu01609, populus_peu06768, populus_peu20665 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598949, gene-LOC132642009 |
| Solanaceae | Solanum chilense | 2 | SOLCI003636500, SOLCI005208300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107019024, gene-LOC107032384 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_13660, gene_8247 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3016, TC10G0785 |
| Zosteraceae | Zostera marina | 2 | Zosma05g27600.v3.1, Zosma06g10290.v3.1 |