Basic Information
Locus ID:
Ftri9G33356
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 1663672 | 1665324 | + | Ftri9G33356 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 36,934.77 Da | 53.71 | 80.49 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 14 | 282 | 6.3E-84 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 3 | 315 | 2.54E-98 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 3 | 291 | 2.6E-95 | IPR012334 |
| SMART | SM00710 | pbh1 | 96 | 122 | 1200.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 123 | 144 | 17.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 205 | 226 | 1500.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 146 | 166 | 2300.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 176 | 197 | 1.5 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 153 | 166 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_035839972.1 | polygalacturonase At1g48100 [Helianthus annuus] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6N9W1 | Pectate_lyase_3 domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_22135 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology