Basic Information
Locus ID:
Ftri9G28338
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Agamous-like MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 78990373 | 78999604 | + | Ftri9G28338 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.36 | 24,040.85 Da | 48.52 | 100.76 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 43 | 79 | 1.3E-18 | IPR002100 |
| Pfam | PF01486 | K-box region | 103 | 188 | 1.2E-20 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 37 | 96 | 5.89E-21 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 46 | 121 | 7.4E-16 | IPR036879 |
| SMART | SM00432 | madsneu2 | 34 | 89 | 5.4E-20 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 34 | 79 | 22.959824 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 105 | 198 | 13.403203 | IPR002487 |
| PRINTS | PR00404 | MADS domain signature | 56 | 71 | 7.2E-18 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 36 | 56 | 7.2E-18 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 71 | 92 | 7.2E-18 | IPR002100 |
| Coils | Coil | Coil | 164 | 188 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45660.1 | AGAMOUS-like 20. Controls flowering and is required for CO to promote flowering. It acts downstream of FT. Overexpression of (SOC1) AGL20 suppresses not only the late flowering of plants that have functional FRI and FLC alleles but also the delayed phase transitions during the vegetative stages of development. AGL20/SOC1 acts with AGL24 to promote flowering and inflorescence meristem identity.AGL20 upregulates expression of AGL24 in response to GA. | 0 |
| RefSeq | XP_024991235.1 | MADS-box protein AGL42-like [Cynara cardunculus var. scolymus] | 0 |
| O64645 | MADS-box protein SOC1 OS=Arabidopsis thaliana OX=3702 GN=SOC1 PE=1 SV=1 | 0 | |
| TrEMBL | F8K8W3 | GSOC1 protein OS=Gerbera hybrida OX=18101 GN=gsoc1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology