Basic Information
Locus ID:
Ftri9G25855
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 67498464 | 67504839 | + | Ftri9G25855 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 125,850.08 Da | 31.36 | 92.67 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 9 | 284 | 1.88569E-57 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 188 | 221 | 3.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 84 | 121 | 2.5E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 45 | 79 | 0.0018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 126 | 158 | 0.032 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 313 | 680 | 1.8E-86 | IPR006692 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 729 | 941 | 3.3E-62 | IPR010714 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 950 | 1085 | 5.7E-60 | IPR010714 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 228 | 499 | 4.71E-13 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 282 | 5.27E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 286 | 6.1E-101 | IPR015943 |
| Gene3D | G3DSA:1.25.40.470 | - | 568 | 726 | 5.4E-49 | - |
| SMART | SM00320 | WD40_4 | 40 | 79 | 5.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 183 | 222 | 3.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 163 | 0.0063 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 37 | 31.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 246 | 284 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 82 | 121 | 6.1E-9 | IPR001680 |
| PIRSF | PIRSF003354 | Alpha-COP | 225 | 1086 | 4.2E-273 | IPR016391 |
| PIRSF | PIRSF003354 | Alpha-COP | 1 | 227 | 7.3E-143 | IPR016391 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 88 | 11.711506 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 89 | 121 | 11.207411 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 230 | 252 | 9.672996 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 190 | 224 | 12.847725 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 89 | 130 | 14.117617 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 47 | 79 | 9.572873 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 190 | 224 | 10.68014 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 230 | 244 | 8.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 209 | 223 | 8.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 108 | 122 | 8.0E-6 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_035844777.1 | coatomer subunit alpha-1 [Helianthus annuus] | 0 |
| Q94A40 | Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2 | 0 | |
| TrEMBL | A0A251UXC2 | Coatomer subunit alpha OS=Helianthus annuus OX=4232 GN=COPA3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology