Basic Information
Locus ID:
Ftri9G25631
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Short Name:
PDC1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 13733436 | 13735894 | + | Ftri9G25631 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.11 | 60,687.36 Da | 35.23 | 89.28 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 350 | 540 | 5.62724E-82 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 15 | 176 | 1.23061E-91 | - |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 395 | 528 | 1.0E-9 | IPR011766 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 209 | 326 | 1.1E-20 | IPR012000 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 12 | 182 | 1.6E-34 | IPR012001 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 349 | 550 | 1.79E-36 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 12 | 186 | 4.95E-43 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 191 | 334 | 1.01E-31 | IPR029035 |
| Gene3D | G3DSA:3.40.50.970 | - | 7 | 185 | 2.3E-60 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 198 | 334 | 2.2E-33 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 343 | 542 | 8.3E-50 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 7 | 335 | 1.6E-122 | IPR012110 |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 333 | 552 | 1.3E-67 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01320.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_022025554.1 | pyruvate decarboxylase 2 isoform X2 [Helianthus annuus] | 0 |
| P51846 | Pyruvate decarboxylase 2 OS=Nicotiana tabacum OX=4097 GN=PDC2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6MPJ6 | pyruvate decarboxylase OS=Mikania micrantha OX=192012 GN=E3N88_31424 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology