Basic Information
Locus ID:
Ftri9G23012
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 87277828 | 87279233 | + | Ftri9G23012 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 40,714.46 Da | 38.19 | 102.32 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 13 | 56 | 1.99621E-20 | - |
| Pfam | PF04564 | U-box domain | 9 | 78 | 6.7E-17 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 80 | 1.16E-24 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 146 | 318 | 8.45E-9 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 114 | 338 | 5.5E-9 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 95 | 3.9E-26 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 12 | 77 | 2.8E-25 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 8 | 84 | 27.954178 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11840.1 | plant U-box 24. Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_021997544.1 | E3 ubiquitin-protein ligase PUB24 [Helianthus annuus] | 0 |
| Q9SF15 | E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana OX=3702 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6LS53 | RING-type E3 ubiquitin transferase OS=Mikania micrantha OX=192012 GN=E3N88_37804 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology