Basic Information
Locus ID:
Ftri9G18197
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Short Name:
TIR1
Description:
Protein TRANSPORT INHIBITOR RESPONSE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 2319157 | 2323591 | - | Ftri9G18197 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.96 | 54,845.85 Da | 48.04 | 93.46 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 27 | 59 | 1.3E-7 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 42 | 426 | 1.04E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 7 | 479 | 6.3E-143 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 398 | 422 | 25.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 289 | 313 | 2.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 349 | 372 | 300.0 | IPR006553 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_021987578.1 | protein TRANSPORT INHIBITOR RESPONSE 1 [Helianthus annuus] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A251TG39 | Putative F-box domain, Leucine-rich repeat domain, L domain-like protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr10g0283821 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology