Basic Information
Locus ID:
Ftri9G18097
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 81721812 | 81722642 | - | Ftri9G18097 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 29,954.07 Da | 76.79 | 66.74 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14369 | zinc-ribbon | 8 | 42 | 7.0E-12 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 110 | 152 | 7.7E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 91 | 157 | 1.97E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 78 | 157 | 1.4E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 111 | 151 | 5.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 111 | 152 | 12.149959 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 264 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_021977128.1 | probable E3 ubiquitin-protein ligase RHC2A [Helianthus annuus] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251U538 | RING-type E3 ubiquitin transferase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr08g0220981 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology