Basic Information
Locus ID:
Ftri9G15569
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 88395467 | 88397055 | - | Ftri9G15569 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 23,941.54 Da | 47.36 | 109.25 | 0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 169 | 211 | 3.7E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 168 | 214 | 1.03E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 132 | 214 | 5.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 169 | 210 | 4.1E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 169 | 211 | 12.090947 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17730.1 | NEP-interacting protein 2. Intrinsic thylakoid membrane protein that fixes RPOTmp on the stromal side of the thylakoid membrane. | 0 |
| RefSeq | XP_022004756.1 | NEP1-interacting protein 2 [Helianthus annuus] | 0 |
| Q8GT74 | NEP1-interacting protein 2 OS=Arabidopsis thaliana OX=3702 GN=NIP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251SMH1 | Putative zinc finger, RING/FYVE/PHD-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr13g0386721 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 3 | Ftri8G03151, Ftri8G04897, Ftri9G15569 |