Basic Information
Locus ID:
Ftri9G12447
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 87646223 | 87654958 | - | Ftri9G12447 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 101,790.80 Da | 49.80 | 83.13 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 217 | 535 | 4.71048E-85 | - |
| CDD | cd18793 | SF2_C_SNF | 733 | 877 | 1.43215E-57 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 648 | 694 | 1.3E-6 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 231 | 612 | 3.0E-68 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 772 | 867 | 1.3E-15 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 544 | 924 | 2.66E-57 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 206 | 535 | 4.29E-46 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 643 | 708 | 3.74E-11 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 427 | 546 | 6.7E-31 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 188 | 292 | 1.1E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 550 | 926 | 3.7E-65 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 302 | 392 | 1.7E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 632 | 728 | 1.4E-11 | IPR013083 |
| SMART | SM00487 | ultradead3 | 213 | 514 | 3.2E-28 | IPR014001 |
| SMART | SM00184 | ring_2 | 650 | 690 | 0.0023 | IPR001841 |
| SMART | SM00490 | helicmild6 | 784 | 867 | 2.5E-19 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 231 | 497 | 12.973743 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 650 | 689 | 11.102496 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 735 | 920 | 13.790354 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 665 | 674 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 121 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021997550.1 | helicase-like transcription factor CHR28 [Helianthus annuus] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6LSN1 | Helicase-like transcription factor CHR28 OS=Mikania micrantha OX=192012 GN=E3N88_37887 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology