Basic Information
Locus ID:
Ftri9G11291
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 84567713 | 84573692 | - | Ftri9G11291 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 20,228.91 Da | 42.78 | 93.63 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 6 | 145 | 1.58648E-43 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 8 | 144 | 1.2E-32 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 6 | 151 | 1.79E-43 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 3 | 159 | 5.6E-43 | IPR016135 |
| SMART | SM00212 | ubc_7 | 5 | 150 | 6.5E-43 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 2 | 150 | 41.240902 | IPR000608 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50870.1 | ubiquitin-conjugating enzyme 27. | 0 |
| RefSeq | XP_021974379.1 | ubiquitin-conjugating enzyme E2 27 [Helianthus annuus] | 0 |
| Q9FI61 | Ubiquitin-conjugating enzyme E2 27 OS=Arabidopsis thaliana OX=3702 GN=UBC27 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251U1M7 | Putative ubiquitin-conjugating enzyme E2 N OS=Helianthus annuus OX=4232 GN=UBE2N PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Ftri9G11291.