Basic Information
Locus ID:
Ftri9G09550
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
TMV resistance protein N-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 85151385 | 85156681 | + | Ftri9G09550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.50 | 94,780.79 Da | 43.77 | 94.46 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 608 | 817 | 2.9E-24 | IPR002182 |
| Pfam | PF00069 | Protein kinase domain | 164 | 339 | 1.5E-32 | IPR000719 |
| Pfam | PF01582 | TIR domain | 413 | 575 | 2.8E-42 | IPR000157 |
| SUPERFAMILY | SSF52200 | Toll/Interleukin receptor TIR domain | 407 | 551 | 6.54E-37 | IPR035897 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 143 | 343 | 2.63E-53 | IPR011009 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 590 | 828 | 7.5E-50 | IPR027417 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 132 | 241 | 8.0E-28 | - |
| Gene3D | G3DSA:1.10.8.430 | - | 748 | 832 | 1.3E-8 | IPR042197 |
| Gene3D | G3DSA:3.40.50.10140 | - | 411 | 577 | 1.8E-61 | IPR035897 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 244 | 348 | 3.9E-30 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 579 | 747 | 4.4E-29 | IPR027417 |
| SMART | SM00255 | till_3 | 413 | 549 | 9.8E-40 | IPR000157 |
| SMART | SM00220 | serkin_6 | 163 | 407 | 1.3E-12 | IPR000719 |
| ProSiteProfiles | PS50104 | TIR domain profile. | 412 | 573 | 35.661716 | IPR000157 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 163 | 438 | 26.746487 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 169 | 191 | - | IPR017441 |
| PRINTS | PR00364 | Disease resistance protein signature | 690 | 704 | 1.6E-11 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 782 | 796 | 1.6E-11 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 615 | 630 | 1.6E-11 | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G36930.3 | - | 0 |
| RefSeq | XP_024989992.1 | TMV resistance protein N-like [Cynara cardunculus var. scolymus] | 0 |
| A0A290U7C4 | Disease resistance protein Roq1 OS=Nicotiana benthamiana OX=4100 GN=ROQ1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251U1V2 | Putative toll/interleukin-1 receptor (TIR) domain-containing protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr08g0210991 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 8 | Ftri1G03248, Ftri1G09039, Ftri1G17660, Ftri1G29281 ... |