Basic Information
Locus ID:
Ftri9G04844
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 86302935 | 86309839 | + | Ftri9G04844 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 133,138.73 Da | 56.63 | 73.35 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 1071 | 1114 | 2.45211E-16 | - |
| CDD | cd12108 | Hr-like | 296 | 424 | 4.12979E-16 | - |
| CDD | cd12108 | Hr-like | 53 | 180 | 3.72141E-29 | - |
| CDD | cd12108 | Hr-like | 617 | 763 | 3.68901E-27 | - |
| Pfam | PF13639 | Ring finger domain | 1071 | 1113 | 2.9E-6 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 943 | 1018 | 1.9E-18 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 615 | 764 | 4.9E-8 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 294 | 425 | 3.7E-6 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 51 | 182 | 1.7E-11 | IPR012312 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1069 | 1125 | 4.32E-8 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 936 | 999 | 8.37E-16 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1009 | 1064 | 1.7E-15 | IPR037275 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 609 | 859 | 1.3E-25 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 293 | 442 | 4.8E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1067 | 1156 | 6.6E-9 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 48 | 200 | 5.3E-33 | - |
| SMART | SM00184 | ring_2 | 1072 | 1113 | 1.7E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1008 | 1071 | 28.382442 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1072 | 1114 | 11.087743 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 936 | 1005 | 25.418638 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 833 | 861 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 833 | 858 | - | - |
| Coils | Coil | Coil | 367 | 387 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_021993887.1 | zinc finger protein BRUTUS [Helianthus annuus] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A251TEI4 | Putative zinc finger protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr11g0341021 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology