Basic Information
Locus ID:
Ftri9G03990
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Short Name:
PLDa1
Description:
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 77801433 | 77806532 | - | Ftri9G03990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 122,767.32 Da | 34.92 | 82.52 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04015 | C2_plant_PLD | 288 | 458 | 6.60293E-55 | - |
| Pfam | PF00614 | Phospholipase D Active site motif | 960 | 986 | 1.7E-7 | IPR001736 |
| Pfam | PF00614 | Phospholipase D Active site motif | 634 | 671 | 8.6E-8 | IPR001736 |
| Pfam | PF12357 | Phospholipase D C terminal | 1032 | 1056 | 2.8E-6 | IPR024632 |
| Pfam | PF00069 | Protein kinase domain | 1 | 185 | 2.4E-18 | IPR000719 |
| Pfam | PF00168 | C2 domain | 348 | 437 | 3.7E-13 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 291 | 459 | 5.14E-16 | IPR035892 |
| SUPERFAMILY | SSF56024 | Phospholipase D/nuclease | 793 | 1043 | 1.06E-26 | - |
| SUPERFAMILY | SSF56024 | Phospholipase D/nuclease | 461 | 751 | 4.08E-31 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2 | 194 | 2.83E-40 | IPR011009 |
| Gene3D | G3DSA:3.30.870.10 | Endonuclease Chain A | 756 | 1007 | 5.3E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 127 | 209 | 7.4E-7 | - |
| Gene3D | G3DSA:3.30.870.10 | Endonuclease Chain A | 509 | 755 | 4.1E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 119 | 3.5E-36 | - |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 292 | 467 | 1.8E-12 | IPR035892 |
| SMART | SM00155 | pld_4 | 959 | 986 | 8.4E-8 | IPR001736 |
| SMART | SM00239 | C2_3c | 294 | 434 | 6.0E-10 | IPR000008 |
| SMART | SM00155 | pld_4 | 633 | 671 | 0.0079 | IPR001736 |
| SMART | SM00220 | serkin_6 | 1 | 193 | 8.9E-5 | IPR000719 |
| ProSiteProfiles | PS50035 | Phospholipase D phosphodiesterase active site profile. | 633 | 671 | 10.204399 | IPR001736 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 193 | 22.902039 | IPR000719 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 281 | 435 | 11.472744 | IPR000008 |
| ProSiteProfiles | PS50035 | Phospholipase D phosphodiesterase active site profile. | 959 | 986 | 14.786399 | IPR001736 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 53 | 65 | - | IPR008271 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko00564 (Glycerophospholipid metabolism)
map00564 (Glycerophospholipid metabolism)
ko00565 (Ether lipid metabolism)
map00565 (Ether lipid metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko04014 (Ras signaling pathway)
map04014 (Ras signaling pathway)
ko04024 (cAMP signaling pathway)
map04024 (cAMP signaling pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04072 (Phospholipase D signaling pathway)
map04072 (Phospholipase D signaling pathway)
map04666 (Fc gamma R-mediated phagocytosis)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G52570.1 | phospholipase D alpha 2. member of C2-PLD subfamily | 0 |
| RefSeq | XP_022033716.1 | phospholipase D alpha 1 [Helianthus annuus] | 0 |
| P93400 | Phospholipase D alpha 1 OS=Nicotiana tabacum OX=4097 GN=PLD1 PE=2 SV=2 | 0 | |
| TrEMBL | B2KNE6 | Phospholipase D OS=Helianthus annuus OX=4232 GN=PLD1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology