Basic Information
Locus ID:
Ftri9G03016
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 87216272 | 87216850 | + | Ftri9G03016 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.37 | 21,402.21 Da | 51.34 | 93.85 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 134 | 175 | 2.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 127 | 181 | 4.54E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 102 | 180 | 1.5E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 134 | 174 | 2.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 134 | 175 | 12.592549 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53190.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021974880.1 | E3 ubiquitin-protein ligase MPSR1 [Helianthus annuus] | 0 |
| Q9ZU51 | E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2 | 0 | |
| TrEMBL | A0A251TSP7 | Putative zinc finger, RING/FYVE/PHD-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr09g0242151 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_21106, gene_21107 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G30016, Ftri9G03016 |
| Plantaginaceae | Plantago ovata | 7 | Pov_00005098, Pov_00012293, Pov_00017219, Pov_00027224 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132608268 |