Basic Information
Locus ID:
Ftri9G00006
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 78940771 | 78946152 | + | Ftri9G00006 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.09 | 47,111.42 Da | 31.64 | 72.81 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 297 | 331 | 0.002 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 143 | 178 | 0.0013 | IPR001680 |
| Pfam | PF18044 | CCCH-type zinc finger | 114 | 133 | 4.7E-8 | IPR041367 |
| Pfam | PF00400 | WD domain, G-beta repeat | 259 | 292 | 0.0035 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 132 | 423 | 2.2E-45 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 110 | 134 | 1.83E-6 | IPR036855 |
| Gene3D | G3DSA:2.130.10.10 | - | 219 | 430 | 1.1E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 135 | 204 | 4.1E-9 | IPR015943 |
| Gene3D | G3DSA:2.30.30.1190 | - | 95 | 134 | 4.5E-5 | - |
| Gene3D | G3DSA:3.30.1370.210 | - | 9 | 57 | 2.2E-5 | - |
| SMART | SM00320 | WD40_4 | 139 | 178 | 0.0017 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 111 | 135 | 4.2E-5 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 21 | 46 | 0.11 | IPR000571 |
| SMART | SM00320 | WD40_4 | 255 | 292 | 6.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 336 | 379 | 34.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 211 | 248 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 295 | 332 | 4.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 382 | 418 | 21.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 262 | 295 | 10.047417 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 146 | 187 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 262 | 301 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 21 | 47 | 10.361437 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 110 | 136 | 14.239135 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 146 | 178 | 10.363778 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 279 | 293 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 165 | 179 | 1.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 319 | 333 | 1.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 279 | 293 | 1.8E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_022037804.1 | zinc finger CCCH domain-containing protein 63 isoform X1 [Helianthus annuus] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251URA5 | Putative transducin/WD40 repeat-like superfamily protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0141361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology