Basic Information
Locus ID:
Ftri8G33312
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 74240670 | 74247915 | - | Ftri8G33312 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 126,000.59 Da | 53.73 | 72.09 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 48 | 123 | 6.33678E-11 | - |
| CDD | cd12108 | Hr-like | 239 | 367 | 1.04574E-12 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 998 | 1041 | 3.02076E-16 | - |
| CDD | cd12108 | Hr-like | 550 | 696 | 3.31444E-27 | - |
| Pfam | PF13639 | Ring finger domain | 998 | 1040 | 3.2E-6 | IPR001841 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 548 | 697 | 1.1E-7 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1046 | 1103 | 3.4E-24 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 237 | 369 | 1.3E-8 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 880 | 955 | 1.7E-18 | IPR008913 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 946 | 989 | 5.1E-11 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 995 | 1045 | 6.62E-8 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 873 | 936 | 1.44E-10 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 991 | 1050 | 6.6E-9 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 40 | 129 | 1.2E-11 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 235 | 385 | 1.8E-19 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1069 | 1111 | 1.6E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 542 | 790 | 8.7E-25 | - |
| SMART | SM00184 | ring_2 | 999 | 1040 | 3.5E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 999 | 1041 | 10.954966 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 945 | 1010 | 22.061661 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 873 | 942 | 25.389936 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 766 | 789 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 766 | 792 | - | - |
| Coils | Coil | Coil | 310 | 330 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_021993887.1 | zinc finger protein BRUTUS [Helianthus annuus] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A251TEI4 | Putative zinc finger protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr11g0341021 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology