Basic Information
Locus ID:
Ftri8G33145
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 57860141 | 57864894 | - | Ftri8G33145 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.97 | 34,258.54 Da | 33.91 | 70.32 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13570 | PQQ-like domain | 216 | 254 | 0.003 | IPR025666 |
| Pfam | PF00400 | WD domain, G-beta repeat | 267 | 300 | 0.0029 | IPR001680 |
| Pfam | PF18044 | CCCH-type zinc finger | 114 | 133 | 1.6E-8 | IPR041367 |
| Pfam | PF00400 | WD domain, G-beta repeat | 144 | 179 | 8.4E-4 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 110 | 134 | 5.36E-7 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 142 | 314 | 2.2E-29 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 210 | 316 | 1.9E-15 | IPR015943 |
| Gene3D | G3DSA:2.30.30.1190 | - | 97 | 134 | 1.9E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 135 | 209 | 2.9E-11 | IPR015943 |
| Gene3D | G3DSA:3.30.1370.210 | - | 8 | 57 | 2.2E-5 | - |
| SMART | SM00356 | c3hfinal6 | 21 | 46 | 0.24 | IPR000571 |
| SMART | SM00320 | WD40_4 | 137 | 179 | 0.0017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 219 | 256 | 5.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 263 | 300 | 0.0082 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 111 | 135 | 2.7E-5 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 270 | 303 | 9.493783 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 110 | 136 | 14.295469 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 147 | 179 | 10.495596 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 270 | 309 | 12.379869 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 21 | 47 | 10.276935 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 147 | 188 | 13.148488 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 287 | 301 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 287 | 301 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 166 | 180 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 243 | 257 | 2.1E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 92 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_022037805.1 | zinc finger CCCH domain-containing protein 63 isoform X2 [Helianthus annuus] | 0 |
| Q9FNZ1 | Zinc finger CCCH domain-containing protein 63 OS=Arabidopsis thaliana OX=3702 GN=ZFWD2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6LVB2 | WD_REPEATS_REGION domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_38913 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology