Basic Information
Locus ID:
Ftri8G29593
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Carbohydrate-binding protein of the ER
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 3573725 | 3576929 | - | Ftri8G29593 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 74,174.16 Da | 39.19 | 88.33 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 30 | 296 | 4.07969E-94 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 441 | 549 | 2.5E-13 | IPR001245 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 29 | 298 | 9.1E-53 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 369 | 626 | 5.13E-25 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 7 | 305 | 1.01E-81 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 103 | 3.5E-33 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 375 | 471 | 6.4E-13 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 104 | 313 | 1.7E-62 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 472 | 648 | 6.5E-16 | - |
| SMART | SM00220 | serkin_6 | 24 | 304 | 1.8E-45 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 24 | 303 | 39.891106 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 354 | 648 | 11.269758 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 30 | 56 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 149 | 161 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51550.1 | Malectin/receptor-like protein kinase family protein. Encodes a synergid-expressed, plasma-membrane localized receptor-like kinase that accumulates asymetrically in the synergid membrnane at the filiform apparatus and mediates male-female gametophyte interactions during pollen tube reception. | 0 |
| RefSeq | XP_043617608.1 | probable receptor-like protein kinase At1g30570 [Erigeron canadensis] | 0 |
| Q9SCZ4 | Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana OX=3702 GN=FER PE=1 SV=1 | 0 | |
| TrEMBL | A0A2U1KZY3 | Protein kinase-like domain, Concanavalin A-like lectin/glucanase domain protein OS=Artemisia annua OX=35608 GN=CTI12_AA546010 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 9 | Ftri14G05518, Ftri14G19961, Ftri7G00942, Ftri7G02286 ... |