Basic Information
Locus ID:
Ftri8G29013
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 6791467 | 6797789 | - | Ftri8G29013 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 46,578.29 Da | 48.75 | 77.68 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 143 | 217 | 2.52725E-51 | - |
| CDD | cd12354 | RRM3_TIA1_like | 263 | 338 | 4.9979E-35 | - |
| CDD | cd12352 | RRM1_TIA1_like | 60 | 129 | 2.50744E-35 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 265 | 331 | 5.6E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 144 | 214 | 1.1E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 60 | 125 | 7.7E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 60 | 221 | 2.65E-41 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 249 | 342 | 9.64E-21 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 140 | 242 | 1.2E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 139 | 3.2E-19 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 243 | 342 | 8.5E-22 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 264 | 334 | 6.0E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 58 | 127 | 1.0E-12 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 143 | 216 | 7.1E-24 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 263 | 338 | 14.50465 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 60 | 131 | 13.430161 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 142 | 220 | 17.404068 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 252 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_021997050.1 | oligouridylate-binding protein 1B [Helianthus annuus] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A251SZH5 | Putative nucleotide-binding alpha-beta plait domain-containing protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr12g0360191 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology