Basic Information
Locus ID:
Ftri8G28346
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Protein-only RNase P
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 1571950 | 1576383 | + | Ftri8G28346 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 84,773.53 Da | 46.42 | 77.61 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 264 | 409 | 2.3E-55 | IPR033443 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 145 | 205 | 6.2E-14 | IPR033443 |
| Pfam | PF16953 | Protein-only RNase P | 451 | 676 | 8.6E-74 | IPR031595 |
| Gene3D | G3DSA:3.40.50.11980 | - | 468 | 642 | 5.9E-198 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 153 | 203 | 2.4E-8 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 262 | 679 | 5.9E-198 | IPR011990 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 322 | 356 | 9.580234 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 81 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_021996561.1 | proteinaceous RNase P 1, chloroplastic/mitochondrial isoform X1 [Helianthus annuus] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251T1L9 | ribonuclease P OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr12g0355001 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology