Basic Information
Locus ID:
Ftri8G26014
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 72568520 | 72590603 | + | Ftri8G26014 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 99,171.16 Da | 46.74 | 82.74 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 236 | 544 | 4.45934E-71 | - |
| CDD | cd18793 | SF2_C_SNF | 703 | 847 | 1.12496E-55 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 251 | 617 | 2.2E-51 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 742 | 837 | 5.0E-14 | IPR001650 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 655 | 691 | 1.0E-4 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 642 | 697 | 1.1E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 549 | 894 | 9.91E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 225 | 539 | 1.54E-35 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 441 | 549 | 6.2E-27 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 323 | 413 | 1.6E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 555 | 896 | 8.1E-64 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 648 | 699 | 1.3E-8 | IPR013083 |
| SMART | SM00490 | helicmild6 | 754 | 837 | 2.5E-17 | IPR001650 |
| SMART | SM00487 | ultradead3 | 232 | 537 | 5.8E-16 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 655 | 694 | 10.881201 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 709 | 890 | 14.004468 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 311 | 520 | 11.791714 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 670 | 679 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 119 | - | - |
| Coils | Coil | Coil | 353 | 373 | - | - |
Gene Ontology
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021997550.1 | helicase-like transcription factor CHR28 [Helianthus annuus] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6LSN1 | Helicase-like transcription factor CHR28 OS=Mikania micrantha OX=192012 GN=E3N88_37887 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology