Basic Information
Locus ID:
Ftri8G25313
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 946022 | 949397 | + | Ftri8G25313 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 46,757.90 Da | 43.77 | 92.45 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 44 | 242 | 1.29148E-134 | - |
| CDD | cd18787 | SF2_C_DEAD | 253 | 383 | 6.65076E-61 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 266 | 374 | 6.8E-29 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 65 | 226 | 2.5E-40 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 109 | 394 | 5.19E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 249 | 413 | 5.8E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 30 | 248 | 2.8E-67 | IPR027417 |
| SMART | SM00487 | ultradead3 | 59 | 256 | 9.3E-56 | IPR014001 |
| SMART | SM00490 | helicmild6 | 293 | 374 | 1.5E-31 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 252 | 413 | 25.880337 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 40 | 68 | 10.40907 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 71 | 241 | 28.679668 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 187 | 195 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54270.1 | eif4a-2. member of eIF4A - eukaryotic initiation factor 4A | 0 |
| RefSeq | XP_021996533.1 | eukaryotic initiation factor 4A-15 [Helianthus annuus] | 0 |
| Q40468 | Eukaryotic initiation factor 4A-15 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2J6JSH1 | Eukaryotic initiation factor 4A-11 OS=Lactuca sativa OX=4236 GN=LSAT_5X143121 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology