Basic Information
Locus ID:
Ftri8G23647
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 73159728 | 73161177 | + | Ftri8G23647 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.42 | 49,939.37 Da | 39.47 | 105.47 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 35 | 77 | 1.40579E-24 | - |
| Pfam | PF04564 | U-box domain | 31 | 103 | 3.0E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 137 | 411 | 1.08E-18 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 26 | 109 | 3.89E-29 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 10 | 107 | 1.3E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 119 | 438 | 8.3E-16 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 34 | 98 | 2.1E-30 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 30 | 105 | 34.703445 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_021997483.1 | U-box domain-containing protein 21 [Helianthus annuus] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251T0R9 | RING-type E3 ubiquitin transferase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr12g0365491 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology